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LOC4347768 protein ALTERED PHOSPHATE STARVATION RESPONSE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347768, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4347768
Gene description
protein ALTERED PHOSPHATE STARVATION RESPONSE 1
Locus tag
OSNPB_090547300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in milk grains (RPKM 30.4), flowers (RPKM 13.5) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26074537..26080428)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21630771..21636794)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347767 Neighboring gene uncharacterized LOC136351907 Neighboring gene probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9 Neighboring gene uncharacterized LOC136351653

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein ALTERED PHOSPHATE STARVATION RESPONSE 1
Names
OSJNBa0038K02.26
Os09g0547300
bzip-related transcription factor -like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    26074537..26080428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756430.3 → XP_015611916.1  protein ALTERED PHOSPHATE STARVATION RESPONSE 1

    UniProtKB/TrEMBL
    A0A0P0XR15, Q0IZV2, Q651Q0
    Conserved Domains (2) summary
    pfam04782
    Location:504 → 798
    DUF632; Protein of unknown function (DUF632)
    pfam04783
    Location:1 → 58
    DUF630; Protein of unknown function (DUF630)
Nucleotide Protein
Heading Accession and Version

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