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LOC4347685 endoglucanase 24-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347685, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4347685
Gene description
endoglucanase 24-like
Locus tag
OSNPB_090533900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
cellulase; OJ1112_E07.17-1
Expression
Biased expression in flowers (RPKM 190.0), flower buds (RPKM 63.8) and 2 other tissues See more
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Genomic context

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See LOC4347685 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (25418456..25422684, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20976455..20980645, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PBL19 Neighboring gene HVA22-like protein i Neighboring gene uncharacterized LOC136351778 Neighboring gene seipin-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoglucanase 24
Names
Endo-1,4-beta glucanase 24
LOC_Os09g36350
putative cellulase
NP_001390861.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403932.1 → NP_001390861.1  endoglucanase 24 precursor

    Status: VALIDATED

    Source sequence(s)
    CB671838, CB671839, CF326326, CI250719, CI305034, CI758468
    UniProtKB/Swiss-Prot
    A0A0P0XQY5, Q0J030, Q69SG5
    UniProtKB/TrEMBL
    A0A067Y1U2, B9G4R5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    25418456..25422684 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q69SG5.1 GenPept UniProtKB/Swiss-Prot:Q69SG5

Gene LinkOut

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Molecular Biology Databases
Research Materials