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LOC4347593 UDP-glucosyltransferase UGT13248 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347593, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4347593
Gene description
UDP-glucosyltransferase UGT13248
Locus tag
OSNPB_090518200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0217C03.8; P0498F03.1
Expression
Biased expression in flower buds (RPKM 9.5), roots before flowering (RPKM 8.8) and 1 other tissue See more
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Genomic context

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See LOC4347593 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24633596..24635250)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20222140..20223994)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 79-like Neighboring gene UDP-glycosyltransferase 79-like Neighboring gene UDP-glucosyltransferase UGT13248 Neighboring gene ankyrin repeat-containing protein At5g02620

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables quercetin 3-O-glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables quercetin 7-O-glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucosyltransferase UGT13248
Names
Os09g0518200
crocetin glucosyltransferase 2
putative UDP-glucose:salicylic acid glucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    24633596..24635250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795967.3 → XP_015651453.1  UDP-glucosyltransferase UGT13248

    UniProtKB/TrEMBL
    A2Z361, Q0J0B6, Q69IV0
    Conserved Domains (1) summary
    cl10013
    Location:13 → 462
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
Nucleotide Protein
Heading Accession and Version

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