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LOC4347247 alpha carbonic anhydrase 7 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347247, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4347247
Gene description
alpha carbonic anhydrase 7
Locus tag
OSNPB_090454400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0025H07.3; P0025H07.5
Expression
Biased expression in flower buds (RPKM 9.6), flowers (RPKM 1.6) and 2 other tissues See more
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Genomic context

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See LOC4347247 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (21453890..21460543, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17074260..17079823, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene RHOMBOID-like protein 10, chloroplastic Neighboring gene uncharacterized LOC136351935 Neighboring gene F-box protein At1g10780 Neighboring gene mitochondrial phosphate carrier protein 3, mitochondrial Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbonate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in one-carbon metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha carbonic anhydrase 7
Names
Os09g0454400
Os09g0454500
P0488D02.39
putative nectarin III

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    21453890..21460543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066304349.1 → XP_066160446.1  alpha carbonic anhydrase 7

    UniProtKB/TrEMBL
    A3BZH9
Nucleotide Protein
Heading Accession and Version

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