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LOC4347105 uncharacterized LOC4347105 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347105, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4347105
Gene description
uncharacterized LOC4347105
Locus tag
OSNPB_090424600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4347105 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (19778883..19784533)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (15400684..15406407)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamyl peptidase 3 Neighboring gene S-adenosylmethionine decarboxylase proenzyme Neighboring gene uncharacterized LOC112936460 Neighboring gene protein GAMETE EXPRESSED 2 Neighboring gene glutathione S-transferase T3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-nucleotidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4347105
Names
5'-nucleotidase domain-containing protein DDB_G0275467
Os09g0424600
P0418B08.32
nucleotidase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    19778883..19784533
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795852.3 → XP_015651338.1  uncharacterized protein LOC4347105

    UniProtKB/TrEMBL
    A0A0P0XNA2, B8BFA6, B9G3N6, Q69QI6
    Conserved Domains (1) summary
    pfam05761
    Location:89 → 524
    5_nucleotid; 5' nucleotidase family
Nucleotide Protein
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