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LOC4347093 cellulose synthase A catalytic subunit 9 [UDP-forming]-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347093, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4347093
Gene description
cellulose synthase A catalytic subunit 9 [UDP-forming]-like
Locus tag
OSNPB_090422500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CESA9; OsCesA9; OsJ_028258; P0418B08.2; OJ1740_D06.31
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Genomic context

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See LOC4347093 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (19659519..19664108)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (15281273..15285732)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267827 Neighboring gene putrescine hydroxycinnamoyltransferase 1-like Neighboring gene AUGMIN subunit 8 Neighboring gene uncharacterized LOC136351647

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice. Li F, et al. Plant Biotechnol J, 2017 Sep. PMID 28117552, Free PMC Article
  2. A missense mutation in the transmembrane domain of CESA9 affects cell wall biosynthesis and plant growth in rice. Wang D, et al. Plant Sci, 2012 Nov. PMID 23017906
  3. Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls. Kotake T, et al. J Exp Bot, 2011 Mar. PMID 21209026, Free PMC Article
  4. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  5. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CESA9 mutation could affect integrity of CESA4/7/9 complexes, which may lead to rapid CESA proteasome degradation for low degree of polymerization (DP) cellulose biosynthesis.
    Title: OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.
  2. Results indicate that OsCESA9 (Os09g0422500) plays an important role in cell wall biosynthesis and plant growth.
    Title: A missense mutation in the transmembrane domain of CESA9 affects cell wall biosynthesis and plant growth in rice.
  3. secondary cell wall-specific cellulose synthase catalytic subunit that plays an important role in proper deposition of cellulose in the secondary cell walls
    Title: Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 9 [UDP-forming]
Names
LOC_Os09g25490
putative cellulose synthase
NP_001409697.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422768.1 → NP_001409697.1  cellulose synthase A catalytic subunit 9 [UDP-forming]

    Status: VALIDATED

    Source sequence(s)
    AK121170, CB661447, CI157929
    UniProtKB/Swiss-Prot
    A2Z1C8, B7F6V1, Q69P51

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    19659519..19664108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q69P51.1 GenPept UniProtKB/Swiss-Prot:Q69P51

Gene LinkOut

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