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LOC4346981 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346981, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4346981
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
Locus tag
OSNPB_090397300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1655_B12.15
Expression
Ubiquitous expression in roots after flowering (RPKM 22.4), flowers (RPKM 16.1) and 6 other tissues See more
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Genomic context

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See LOC4346981 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (18244256..18248646)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (13875254..13879646)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346979 Neighboring gene uncharacterized LOC4346980 Neighboring gene protein trichome birefringence-like 14 Neighboring gene uncharacterized LOC4346983

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables trehalose-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
Names
Os09g0397300
putative trehalose-6-phosphate synthase/phosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    18244256..18248646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756424.3 → XP_015611910.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

    UniProtKB/TrEMBL
    B8BF84, H6ST21
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 868
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
Heading Accession and Version

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