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LOC4346795 acetylserotonin O-methyltransferase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346795, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4346795
Gene description
acetylserotonin O-methyltransferase 1-like
Locus tag
OSNPB_090344500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ASMT; ASMT1; OsASMT1
Expression
Biased expression in flower buds (RPKM 47.2), leaves after flowering (RPKM 19.1) and 2 other tissues See more
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Genomic context

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See LOC4346795 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (15078949..15080612, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (10740340..10741924, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278907 Neighboring gene uncharacterized LOC4346794 Neighboring gene uncharacterized LOC4346796 Neighboring gene uncharacterized LOC107278892

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylserotonin O-methyltransferase 1
Names
Acetylserotonin O-methyltransferase 1
LOC_Os09g17560
OSJNBb0057I13.39
OSJNBb0085I16.5
flavonoid 7-O-methyltransferase-like
NP_001409660.1
XP_015610998.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422731.1 → NP_001409660.1  acetylserotonin O-methyltransferase 1

    Status: VALIDATED

    Source sequence(s)
    AK072740
    UniProtKB/Swiss-Prot
    Q6EPG8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    15078949..15080612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755512.3 → XP_015610998.1  acetylserotonin O-methyltransferase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q6EPG8
    UniProtKB/TrEMBL
    B9G320
    Conserved Domains (2) summary
    pfam08100
    Location:35 → 83
    Dimerization; Dimerization domain
    cl17173
    Location:126 → 350
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6EPG8.1 GenPept UniProtKB/Swiss-Prot:Q6EPG8

Gene LinkOut

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