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LOC4346699 phosphoenolpyruvate carboxylase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346699, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4346699
Gene description
phosphoenolpyruvate carboxylase 2
Locus tag
OSNPB_090315700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4346699 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (13025146..13030387, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (8692267..8697393, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351795 Neighboring gene protein ROH1A-like Neighboring gene uncharacterized LOC9267594 Neighboring gene uncharacterized LOC4346700 Neighboring gene plant cysteine oxidase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphoenolpyruvate carboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbon fixation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leaf development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoenolpyruvate carboxylase 2
Names
OSJNBa0057D11.22
Os09g0315700
putative phosphoenolpyruvate carboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    13025146..13030387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756512.2 → XP_015611998.1  phosphoenolpyruvate carboxylase 2

    UniProtKB/TrEMBL
    A0A0P0XLG1, A3BXC6, Q69LW4
    Conserved Domains (1) summary
    pfam00311
    Location:173 → 975
    PEPcase; Phosphoenolpyruvate carboxylase
Nucleotide Protein
Heading Accession and Version

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