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LOC4346519 exosome complex component RRP41 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346519, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4346519
Gene description
exosome complex component RRP41 homolog
Locus tag
OSNPB_090252000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4346519 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (8306512..8311558)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (3959833..3965031)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein C2-DOMAIN ABA-RELATED 11 Neighboring gene uncharacterized LOC136351874 Neighboring gene acetyl-CoA acetyltransferase 2 Neighboring gene E3 ubiquitin-protein ligase UPL1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP41 homolog
Names
B1080A02.33
Os09g0252000
P0574F11.10
putative exosome component 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    8306512..8311558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755152.3 → XP_015610638.1  exosome complex component RRP41 homolog

    UniProtKB/TrEMBL
    A0A0P0XK92, A0A8J8XIX4, B8BDD9, B9G2C8
    Conserved Domains (1) summary
    cd11370
    Location:9 → 235
    RNase_PH_RRP41; RRP41 subunit of eukaryotic exosome

RNA

  1. XR_001539671.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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