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LOC4346475 sulfate transporter 4.1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346475, updated on 18-Sep-2024

Summary

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Gene symbol
LOC4346475
Gene description
sulfate transporter 4.1, chloroplastic
Locus tag
OSNPB_090240500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1178_D01.11-1; OJ1178_D01.11-2; OJ1178_D01.11-3
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Genomic context

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See LOC4346475 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (7419961..7438825)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (3073978..3092836)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351853 Neighboring gene small nucleolar RNA R71 Neighboring gene zinc finger protein CO3-like Neighboring gene uncharacterized LOC136351800 Neighboring gene protein ENHANCER OF LHP1 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables secondary active sulfate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sulfate transporter 4.1, chloroplastic
Names
Os09g0240500
putative sulfate transporter
sulfate transporter-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    7419961..7438825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756986.3 → XP_015612472.1  sulfate transporter 4.1, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0XJS6, Q68UR2, Q8S317
    Conserved Domains (1) summary
    TIGR00815
    Location:65 → 621
    sulP; high affinity sulphate transporter 1
Nucleotide Protein
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