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KIN4A kinesin-like protein KIN-4A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346402, updated on 10-Oct-2024

Summary

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Gene symbol
KIN4A
Gene description
kinesin-like protein KIN-4A
Locus tag
OSNPB_090114500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
BC2; GDD1; KIF4-like; OsJ_28385; OJ1134_E08.39-1; OJ1134_E08.39-2; OJ1134_E08.39-3
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Genomic context

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See KIN4A in Genome Data Viewer
Location:
chromosome: 9
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (5178040..5187830)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (1158010..1167872)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351745 Neighboring gene uncharacterized LOC112936470 Neighboring gene probable inactive histone-lysine N-methyltransferase SUVR1 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of a novel allele of bc12/gdd1 indicates a differential leaf color function for BC12/GDD1 in Indica and Japonica backgrounds. Hu B, et al. Plant Sci, 2020 Sep. PMID 32771145
  2. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
  3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Characterization of a novel allele of bc12/gdd1 indicates a differential leaf color function for BC12/GDD1 in Indica and Japonica backgrounds.
    Title: Characterization of a novel allele of bc12/gdd1 indicates a differential leaf color function for BC12/GDD1 in Indica and Japonica backgrounds.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule-based movement IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic spindle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spindle elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of microtubule associated complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kinesin-like protein KIN-4A
Names
LOC_Os09g02650
Protein BRITTLE CULM 2
Protein GIBBERELLIN-DEFICIENT DWARF 1
kinesin-like protein BC2
putative KIF4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403707.1 → NP_001390636.1  kinesin-like protein KIN-4A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK067738, AK100974, AY224568, CB644373, CB685127, CI447920, CI465788
    UniProtKB/Swiss-Prot
    A0A0P0XKI2, B9G250, Q6YUL7, Q6YUL8

  2. NM_001403708.1 → NP_001390637.1  kinesin-like protein KIN-4A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK058665, AK067738, AK100974, AY224568, CB644373, CB685127, CI447920, CI465788
    UniProtKB/TrEMBL
    B8BCY0

RNA

  1. NR_175402.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK067738, AK100974, CB644373, CB685127, CI224651, CI447920, CI465788

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    5178040..5187830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6YUL8.1 GenPept UniProtKB/Swiss-Prot:Q6YUL8

Gene LinkOut

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Molecular Biology Databases
Research Materials