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LOC4346111 GDT1-like protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346111, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4346111
Gene description
GDT1-like protein 4
Locus tag
OSNPB_080528500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_28031; OJ1770_H02.9
Expression
Biased expression in roots before flowering (RPKM 21.8), flowers (RPKM 2.9) and 1 other tissue See more
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Genomic context

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See LOC4346111 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26454108..26457061, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26307292..26310374, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 2 Neighboring gene uncharacterized LOC4346110 Neighboring gene uncharacterized LOC9269528 Neighboring gene transcription termination factor MTERF8, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Golgi calcium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gDT1-like protein 4
Names
LOC_Os08g41670
putative transmembrane protein(TPA regulated locus protein)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403665.1 → NP_001390594.1  gDT1-like protein 4 precursor

    Status: VALIDATED

    Source sequence(s)
    AK111028, BT128968, CI207894
    UniProtKB/Swiss-Prot
    A0A0P0XIL0, A2YXC7, A3BV37, Q6ZIB9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    26454108..26457061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ZIB9.1 GenPept UniProtKB/Swiss-Prot:Q6ZIB9

Gene LinkOut

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