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LOC4345946 pre-mRNA-splicing factor CWC25 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345946, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4345946
Gene description
pre-mRNA-splicing factor CWC25 homolog
Locus tag
OSNPB_080500200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1118_A06.14-1
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Genomic context

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See LOC4345946 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24841180..24844391, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24695717..24698894, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene COP9 signalosome complex subunit 6-like Neighboring gene peroxisome biogenesis protein 5 Neighboring gene probable protein phosphatase 2C 66 Neighboring gene uncharacterized LOC4345949

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor CWC25 homolog
Names
Os08g0500200

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422616.1 → NP_001409545.1  pre-mRNA-splicing factor CWC25 homolog

    Status: VALIDATED

    Source sequence(s)
    AK064018, CB651935, CI582093
    UniProtKB/TrEMBL
    A0A0N7KQ34, Q6ZKL9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    24841180..24844391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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