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LOC4345847 uncharacterized LOC4345847 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345847, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4345847
Gene description
uncharacterized LOC4345847
Locus tag
OSNPB_080480100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1113_A10.31-1; OJ1113_A10.31-2
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Genomic context

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See LOC4345847 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23857671..23862020, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23717832..23722267, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281868 Neighboring gene protein DETOXIFICATION 27 Neighboring gene 2-oxoglutarate-dependent dioxygenase 19-like Neighboring gene UDP-glucosyltransferase UGT13248-like Neighboring gene plant cysteine oxidase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signal recognition particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of signal recognition particle receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4345847
Names
OSJNBb0092C08.1-1
OSJNBb0092C08.1-2
Os08g0480100
putative signal recognition particle receptor
signal recognition particle receptor subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    23857671..23862020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794367.3 → XP_015649853.1  uncharacterized protein LOC4345847

    UniProtKB/TrEMBL
    A0A0N7KQ10, A2YWB0, Q0J4Z4, Q6Z245, Q6Z246
    Conserved Domains (3) summary
    cd17876
    Location:419 → 622
    SRalpha_C; C-terminal domain of signal recognition particle receptor alpha subunit
    pfam02881
    Location:320 → 389
    SRP54_N; SRP54-type protein, helical bundle domain
    pfam04086
    Location:30 → 289
    SRP-alpha_N; Signal recognition particle, alpha subunit, N-terminal

  2. XM_066303685.1 → XP_066159782.1  uncharacterized protein LOC4345847

    UniProtKB/TrEMBL
    A2YWB0, Q0J4Z4, Q6Z246
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials