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LOC4345795 nitrate reductase [NADH] 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345795, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4345795
Gene description
nitrate reductase [NADH] 1-like
Locus tag
OSNPB_080468100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
NR1; NIA1; OsJ_27622
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Genomic context

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See LOC4345795 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23172769..23178134)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23033215..23038595)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein HVA22 Neighboring gene STOREKEEPER protein Neighboring gene kinetochore protein NDC80 homolog Neighboring gene nitrate reductase [NADH] 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molybdenum ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molybdopterin cofactor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nitrate reductase (NADPH) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sulfite oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nitrate assimilation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nitric oxide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nitrate reductase [NADH] 1
Names
LOC_Os08g36480
P0470B03.25
nitrate reductase apoenzyme
NP_001409523.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422594.1 → NP_001409523.1  nitrate reductase [NADH] 1

    Status: VALIDATED

    Source sequence(s)
    AK102363, AK121810, CB665292, CI157336, CI160390, CI160592
    UniProtKB/Swiss-Prot
    A0A0P0XHA0, P16081, Q0J545, Q6ZC37

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    23172769..23178134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P16081.3 GenPept UniProtKB/Swiss-Prot:P16081

Gene LinkOut

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Molecular Biology Databases
Research Materials