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LOC4345665 probable apyrase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345665, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4345665
Gene description
probable apyrase 6
Locus tag
OSNPB_080436100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4345665 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21328012..21332072)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21190181..21194323)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene chlorophyll a-b binding protein P4, chloroplastic Neighboring gene polypyrimidine tract-binding protein homolog 1 Neighboring gene uncharacterized LOC4345666 Neighboring gene zinc finger A20 and AN1 domain-containing stress-associated protein 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable apyrase 5; probable apyrase 6
Names
OSJNBa0016C11.3
Os08g0436100
putative ectonucleoside triphosphate diphosphohydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    21328012..21332072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026027648.2 → XP_025883433.1  probable apyrase 6 isoform X1

    Conserved Domains (1) summary
    cl17037
    Location:71 → 473
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

  2. XM_015795592.3 → XP_015651078.1  probable apyrase 5 isoform X2

    UniProtKB/TrEMBL
    A0A0N7KPX0, B8BB17, Q6Z543
    Conserved Domains (1) summary
    cl17037
    Location:71 → 473
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
Nucleotide Protein
Heading Accession and Version

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