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LOC4345613 annexin D5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345613, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4345613
Gene description
annexin D5
Locus tag
OSNPB_080425700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4345613 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (20596767..20598760)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (20459649..20461582)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene endoglucanase 21 Neighboring gene type IV inositol polyphosphate 5-phosphatase 9 Neighboring gene uncharacterized LOC4345614 Neighboring gene uncharacterized LOC112936054

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
annexin D5
Names
Os08g0425700
P0456B03.120
putative calcium-binding protein annexin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    20596767..20598760
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795398.3 → XP_015650884.1  annexin D5 isoform X2

    UniProtKB/TrEMBL
    A0A0P0XG10, A2YVD9, Q84Q48
    Conserved Domains (1) summary
    pfam00191
    Location:251 → 316
    Annexin

  2. XM_066303326.1 → XP_066159423.1  annexin D5 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials