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LOC4345605 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345605, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345605
Gene description
methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
Locus tag
OSNPB_080424200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 27.3), flower buds (RPKM 25.5) and 6 other tissues See more
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Genomic context

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See LOC4345605 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (20496704..20503605, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (20359594..20366462, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351504 Neighboring gene alpha carbonic anhydrase 7 Neighboring gene betaine aldehyde dehydrogenase 2-like Neighboring gene uncharacterized LOC136351444 Neighboring gene disease resistance protein RPM1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methylcrotonoyl-CoA carboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-leucine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of methylcrotonoyl-CoA carboxylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
Names
OSJNBa0056L09.27
Os08g0424200
putative methylcrotonyl-CoA carboxylase beta chain, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    20496704..20503605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795469.3 → XP_015650955.1  methylcrotonoyl-CoA carboxylase beta chain, mitochondrial

    UniProtKB/TrEMBL
    B8BAV2, Q6YZ75
    Conserved Domains (1) summary
    PLN02820
    Location:37 → 572
    PLN02820; 3-methylcrotonyl-CoA carboxylase, beta chain
Nucleotide Protein
Heading Accession and Version

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