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LOC4345463 endoglucanase 20-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345463, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4345463
Gene description
endoglucanase 20-like
Locus tag
OSNPB_080387400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GLU15; OsGLU15
Expression
Biased expression in flower buds (RPKM 72.1) and flowers (RPKM 46.8) See more
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Genomic context

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See LOC4345463 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (18441024..18445021)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (18305357..18309368)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene sulfite exporter TauE/SafE family protein 3 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene uncharacterized LOC4345464 Neighboring gene disease resistance protein RGA5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoglucanase 20
Names
Endo-1,4-beta glucanase 20
LOC_Os08g29770
P0434E03.25
putative cellulase
NP_001409484.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422555.1 → NP_001409484.1  endoglucanase 20 precursor

    Status: VALIDATED

    Source sequence(s)
    AK071784
    UniProtKB/Swiss-Prot
    A0A0P0XFV4, Q0J5Y8, Q6ZA06

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    18441024..18445021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ZA06.1 GenPept UniProtKB/Swiss-Prot:Q6ZA06

Gene LinkOut

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