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LOC4345317 uncharacterized LOC4345317 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345317, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4345317
Gene description
uncharacterized LOC4345317
Locus tag
OSNPB_080338900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 8.9), leaves after flowering (RPKM 8.3) and 6 other tissues See more
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Genomic context

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See LOC4345317 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (15332421..15343829, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (15256028..15267434, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene grpE protein homolog 2, mitochondrial Neighboring gene uncharacterized LOC136351561 Neighboring gene D-aminoacyl-tRNA deacylase Neighboring gene uncharacterized LOC107277314

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuA4 histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of piccolo histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4345317
Names
OSJNBa0062G05.8
Os08g0338900
P0702G08.21
enhancer of polycomb-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    15332421..15343829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795635.3 → XP_015651121.1  uncharacterized protein LOC4345317

    UniProtKB/TrEMBL
    B8B9V3, B9G0F3, Q6Z0F1
    Conserved Domains (1) summary
    pfam10513
    Location:7 → 141
    EPL1; Enhancer of polycomb-like
Nucleotide Protein
Heading Accession and Version

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