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LOC4345316 grpE protein homolog 2, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345316, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345316
Gene description
grpE protein homolog 2, mitochondrial
Locus tag
OSNPB_080338700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 54.2), mature seeds (RPKM 50.8) and 6 other tissues See more
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Genomic context

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See LOC4345316 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (15309472..15312683, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (15232918..15236372, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345314 Neighboring gene uncharacterized LOC9269071 Neighboring gene uncharacterized LOC136351561 Neighboring gene uncharacterized LOC4345317

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables adenyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-folding chaperone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PAM complex, Tim23 associated import motor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
grpE protein homolog 2, mitochondrial
Names
OSJNBa0062G05.3
Os08g0338700
P0702G08.16
putative chaperone GrpE

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    15309472..15312683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795551.3 → XP_015651037.1  grpE protein homolog 2, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A0P0XF73, B8B9V2, B9G0F2, Q6Z0G0
    Conserved Domains (2) summary
    PRK14160
    Location:77 → 294
    PRK14160; heat shock protein GrpE; Provisional
    cd00446
    Location:144 → 293
    GrpE; nucleotide exchange factor GrpE

  2. XM_015795550.3 → XP_015651036.1  grpE protein homolog 2, mitochondrial isoform X1

    Conserved Domains (2) summary
    PRK14157
    Location:78 → 317
    PRK14157; heat shock protein GrpE; Provisional
    cd00446
    Location:168 → 317
    GrpE; nucleotide exchange factor GrpE
Nucleotide Protein
Heading Accession and Version

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