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LOC4345284 probable galacturonosyltransferase 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345284, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345284
Gene description
probable galacturonosyltransferase 4
Locus tag
OSNPB_080327100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0670E08.9; OJ1136_A10.122
Expression
Ubiquitous expression in roots after flowering (RPKM 15.0), leaves after flowering (RPKM 10.3) and 6 other tissues See more
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Genomic context

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See LOC4345284 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14465602..14470759)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14397890..14403058)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT5.3 Neighboring gene uncharacterized LOC4345283 Neighboring gene exopolygalacturonase Neighboring gene enoyl-[acyl-carrier-protein] reductase [NADH] 1, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 4
Names
Os08g0327100
putative glycosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    14465602..14470759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795610.3 → XP_015651096.1  probable galacturonosyltransferase 4

    UniProtKB/TrEMBL
    A0A0P0XEP1, B8B9S8, Q0J6E6, Q7F1F3
    Conserved Domains (1) summary
    PLN02829
    Location:20 → 643
    PLN02829; Probable galacturonosyltransferase
Nucleotide Protein
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