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LOC4345269 uncharacterized LOC4345269 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345269, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345269
Gene description
uncharacterized LOC4345269
Locus tag
OSNPB_080323000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4345269 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14173297..14185329, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14105811..14117873, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like Neighboring gene 4-hydroxybenzoate polyprenyltransferase, mitochondrial Neighboring gene uncharacterized LOC136351332 Neighboring gene uncharacterized LOC136351499

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 7S RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables endoplasmic reticulum signal peptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signal recognition particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of signal recognition particle, endoplasmic reticulum targeting IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4345269
Names
OSJNBa0078D03.1
Os08g0323000
Os08g0323266
P0048E12.32
putative signal recognition particle 68K protein
signal recognition particle subunit SRP68

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    14173297..14185329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795135.3 → XP_015650621.1  uncharacterized protein LOC4345269 isoform X2

    UniProtKB/TrEMBL
    B8B9Q7
    Conserved Domains (1) summary
    pfam16969
    Location:44 → 570
    SRP68; RNA-binding signal recognition particle 68

  2. XM_015795134.3 → XP_015650620.1  uncharacterized protein LOC4345269 isoform X1

    UniProtKB/TrEMBL
    B8B9Q7
    Conserved Domains (1) summary
    pfam16969
    Location:44 → 571
    SRP68; RNA-binding signal recognition particle 68
Nucleotide Protein
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