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LOC4345238 uncharacterized LOC4345238 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345238, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345238
Gene description
uncharacterized LOC4345238
Locus tag
OSNPB_080310100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 19.9), flower buds (RPKM 19.5) and 6 other tissues See more
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Genomic context

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See LOC4345238 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (13140013..13143361)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (13072640..13076098)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351548 Neighboring gene uncharacterized LOC107278719 Neighboring gene PGR5-like protein 1A, chloroplastic Neighboring gene uncharacterized LOC9272596 Neighboring gene uncharacterized LOC136351502

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4345238
Names
50S ribosomal protein L15
B1100F03.118
Os08g0310100
putative LSU ribosomal protein L15P

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    13140013..13143361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792934.3 → XP_015648420.1  uncharacterized protein LOC4345238

    UniProtKB/TrEMBL
    A0A8J8Y8I2, B8BBY6, B9FZN2, Q0J6I9, Q6UUH5
    Conserved Domains (1) summary
    PRK05592
    Location:73 → 206
    rplO; 50S ribosomal protein L15; Reviewed
Nucleotide Protein
Heading Accession and Version

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