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LOC4345157 syntaxin-52 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345157, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4345157
Gene description
syntaxin-52
Locus tag
OSNPB_080277900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 27.6), roots after flowering (RPKM 25.7) and 6 other tissues See more
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Genomic context

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See LOC4345157 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (10816872..10820718)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (10759548..10763615)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene flavonol 3-sulfotransferase Neighboring gene uncharacterized LOC136351469 Neighboring gene uncharacterized LOC4345158 Neighboring gene zinc finger protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-52
Names
OSJNBa0091M20.18
Os08g0277900
putative syntaxin of plants 52

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    10816872..10820718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795493.3 → XP_015650979.1  syntaxin-52

    UniProtKB/TrEMBL
    Q0J6R5, Q6Z1L9
    Conserved Domains (2) summary
    cd15841
    Location:139 → 196
    SNARE_Qc; SNARE motif, subgroup Qc
    pfam05739
    Location:172 → 223
    SNARE; SNARE domain

  2. XM_015795495.3 → XP_015650981.1  syntaxin-52

    UniProtKB/TrEMBL
    Q0J6R5, Q6Z1L9
    Conserved Domains (2) summary
    cd15841
    Location:139 → 196
    SNARE_Qc; SNARE motif, subgroup Qc
    pfam05739
    Location:172 → 223
    SNARE; SNARE domain

  3. XM_015795494.3 → XP_015650980.1  syntaxin-52

    UniProtKB/TrEMBL
    Q0J6R5, Q6Z1L9
    Conserved Domains (2) summary
    cd15841
    Location:139 → 196
    SNARE_Qc; SNARE motif, subgroup Qc
    pfam05739
    Location:172 → 223
    SNARE; SNARE domain

  4. XM_015795492.3 → XP_015650978.1  syntaxin-52

    UniProtKB/TrEMBL
    Q0J6R5, Q6Z1L9
    Conserved Domains (2) summary
    cd15841
    Location:139 → 196
    SNARE_Qc; SNARE motif, subgroup Qc
    pfam05739
    Location:172 → 223
    SNARE; SNARE domain

  5. XM_066303319.1 → XP_066159416.1  syntaxin-52

    UniProtKB/TrEMBL
    Q0J6R5, Q6Z1L9
Nucleotide Protein
Heading Accession and Version

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