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LOC4345046 uncharacterized LOC4345046 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345046, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4345046
Gene description
uncharacterized LOC4345046
Locus tag
OSNPB_080243100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 14.7), flower buds (RPKM 6.3) and 6 other tissues See more
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Genomic context

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See LOC4345046 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (8756587..8761802)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (8703777..8708878)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase sigma factor sigF, chloroplastic Neighboring gene uncharacterized LOC4345045 Neighboring gene small nucleolar RNA R71 Neighboring gene NADPH--cytochrome P450 reductase 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables holo-[acyl-carrier-protein] synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lysine biosynthetic process via aminoadipic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4345046
Names
4'-phosphopantetheinyl transferase HetI
OSJNBb0070J06.9
Os08g0243100
putative MtaA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    8756587..8761802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066303633.1 → XP_066159730.1  uncharacterized protein LOC4345046 isoform X2

  2. XM_015795622.3 → XP_015651108.1  uncharacterized protein LOC4345046 isoform X1

    UniProtKB/TrEMBL
    B8BC89, B9FZT3, Q6Z0U9
    Conserved Domains (1) summary
    COG2091
    Location:65 → 231
    Sfp; Phosphopantetheinyl transferase [Coenzyme transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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