U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4345021 probable mannose-1-phosphate guanylyltransferase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345021, updated on 1-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4345021
Gene description
probable mannose-1-phosphate guanylyltransferase 3
Locus tag
OSNPB_080237200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_04069
Expression
Ubiquitous expression in flowers (RPKM 38.8), leaves before flowering (RPKM 35.6) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4345021 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (8395077..8399563, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (8342236..8346662, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglycosylase/hydrolase protein 8-like Neighboring gene uncharacterized LOC9271749 Neighboring gene uncharacterized LOC136351522 Neighboring gene xyloglucan endotransglucosylase/hydrolase protein 24

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannose-1-phosphate guanylyltransferase (GTP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GDP-mannose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable mannose-1-phosphate guanylyltransferase 3
Names
LOC_Os08g13930
P0682A06.20
putative GDP-mannose pyrophosphorylase
NP_001409435.1
XP_066168965.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422506.1 → NP_001409435.1  probable mannose-1-phosphate guanylyltransferase 3

    Status: VALIDATED

    Source sequence(s)
    CB665497, CB672102, CI520761, CI522154, CI748958
    UniProtKB/Swiss-Prot
    A0A0P0XD92, Q0J731, Q6Z9A3
    UniProtKB/TrEMBL
    A2YSQ4, J3SHM4

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    8395077..8399563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066312868.1 → XP_066168965.1  probable mannose-1-phosphate guanylyltransferase 3 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0XD92, Q0J731, Q6Z9A3
    UniProtKB/TrEMBL
    A2YSQ4, J3SHM4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6Z9A3.1 GenPept UniProtKB/Swiss-Prot:Q6Z9A3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials