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LOC4344809 uncharacterized LOC4344809 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344809, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344809
Gene description
uncharacterized LOC4344809
Locus tag
OSNPB_080178300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1120_C08.24-1; OJ1120_C08.24-2
Expression
Ubiquitous expression in roots after flowering (RPKM 11.9), leaves after flowering (RPKM 10.6) and 6 other tissues See more
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Genomic context

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See LOC4344809 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (4636237..4640933)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (4586476..4591479)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene vacuolar sorting protein 18 Neighboring gene sugar transport protein MST5-like Neighboring gene uncharacterized LOC136351318 Neighboring gene uncharacterized LOC136351283

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RES complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4344809
Names
BUD13 homolog
Os08g0178300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    4636237..4640933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792630.3 → XP_015648116.1  uncharacterized protein LOC4344809

    UniProtKB/TrEMBL
    B8BBC6, Q0J7M3, Q6ZKE8
    Conserved Domains (3) summary
    PHA03132
    Location:148 → 360
    PHA03132; thymidine kinase; Provisional
    PHA03247
    Location:116 → 248
    PHA03247; large tegument protein UL36; Provisional
    pfam09736
    Location:379 → 532
    Bud13; Pre-mRNA-splicing factor of RES complex

  2. XM_015792631.3 → XP_015648117.1  uncharacterized protein LOC4344809

    UniProtKB/TrEMBL
    B8BBC6, Q0J7M3, Q6ZKE8
    Conserved Domains (3) summary
    PHA03132
    Location:148 → 360
    PHA03132; thymidine kinase; Provisional
    PHA03247
    Location:116 → 248
    PHA03247; large tegument protein UL36; Provisional
    pfam09736
    Location:379 → 532
    Bud13; Pre-mRNA-splicing factor of RES complex
Nucleotide Protein
Heading Accession and Version

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