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LOC4344716 DEAD-box ATP-dependent RNA helicase 42-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344716, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4344716
Gene description
DEAD-box ATP-dependent RNA helicase 42-like
Locus tag
OSNPB_080159900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_26125
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Genomic context

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See LOC4344716 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (3560643..3565603, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (3513835..3518796, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene AT-hook motif nuclear-localized protein 23 Neighboring gene zinc finger CCCH domain-containing protein 56 Neighboring gene THO complex subunit 7B Neighboring gene probable transcription factor RL9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DEAD-box ATP-dependent RNA helicase 42
Names
LOC_Os08g06344
P0498E12.131
P0672D01.114
putative RNA helicase
NP_001409373.1
XP_066168962.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422444.1 → NP_001409373.1  DEAD-box ATP-dependent RNA helicase 42

    Status: VALIDATED

    Source sequence(s)
    AK071070, AK102356, AP014964, CB673916, CI310982, CI372487, CI615697
    UniProtKB/Swiss-Prot
    B9FZ68, Q84UQ1
    UniProtKB/TrEMBL
    B8BAX3

RNA

  1. NR_186312.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK071070, AK102356, AP014964, CB673916, CB673917, CI310982, CI615697

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    3560643..3565603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066312865.1 → XP_066168962.1  DEAD-box ATP-dependent RNA helicase 42 isoform X1

    UniProtKB/Swiss-Prot
    B9FZ68, Q84UQ1
    UniProtKB/TrEMBL
    B8BAX3

RNA

  1. XR_010742880.1 RNA Sequence

  2. XR_010742878.1 RNA Sequence

  3. XR_001548288.3 RNA Sequence

  4. XR_010742879.1 RNA Sequence

  5. XR_010742875.1 RNA Sequence

  6. XR_001548287.3 RNA Sequence

  7. XR_010742876.1 RNA Sequence

  8. XR_001548286.3 RNA Sequence

  9. XR_001548285.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84UQ1.1 GenPept UniProtKB/Swiss-Prot:Q84UQ1

Gene LinkOut

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Molecular Biology Databases
Research Materials