U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4344542 protein STICHEL-like 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344542, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4344542
Gene description
protein STICHEL-like 2
Locus tag
OSNPB_080120200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
B1203H11.6; OJ1005_B05.35
Expression
Broad expression in flower buds (RPKM 11.5), flowers (RPKM 11.2) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4344542 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1121735..1127014)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1110455..1115785)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene photosystem II core complex proteins psbY, chloroplastic Neighboring gene succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like Neighboring gene uncharacterized LOC136351349 Neighboring gene MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA clamp loader activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of DNA replication factor C complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein STICHEL-like 2
Names
Os08g0120200
putative DNA polymerase III like protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    1121735..1127014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066303343.1 → XP_066159440.1  protein STICHEL-like 2

    UniProtKB/TrEMBL
    Q0J8C4, Q6YPF5

  2. XM_026027503.2 → XP_025883288.1  protein STICHEL-like 2

    UniProtKB/TrEMBL
    B8BAD4, Q0J8C4, Q6YPF5
    Conserved Domains (1) summary
    COG2812
    Location:147 → 497
    DnaX; DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]

  3. XM_066303344.1 → XP_066159441.1  protein STICHEL-like 2

    UniProtKB/TrEMBL
    Q0J8C4, Q6YPF5

  4. XM_015794214.3 → XP_015649700.1  protein STICHEL-like 2

    UniProtKB/TrEMBL
    B8BAD4, Q0J8C4, Q6YPF5
    Conserved Domains (1) summary
    COG2812
    Location:147 → 497
    DnaX; DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]

  5. XM_066303345.1 → XP_066159442.1  protein STICHEL-like 2

    UniProtKB/TrEMBL
    Q0J8C4, Q6YPF5

  6. XM_066303347.1 → XP_066159444.1  protein STICHEL-like 2

    UniProtKB/TrEMBL
    Q0J8C4, Q6YPF5

  7. XM_066303346.1 → XP_066159443.1  protein STICHEL-like 2

    UniProtKB/TrEMBL
    Q0J8C4, Q6YPF5

  8. XM_066303348.1 → XP_066159445.1  protein STICHEL-like 2

    UniProtKB/TrEMBL
    Q0J8C4, Q6YPF5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials