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LOC4344468 phosphatidylinositol-3-phosphatase SAC1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344468, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344468
Gene description
phosphatidylinositol-3-phosphatase SAC1
Locus tag
OSNPB_080109100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 21.3), flower buds (RPKM 20.8) and 6 other tissues See more
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Genomic context

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See LOC4344468 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (456303..463353)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (451126..458175)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene glycolipid transfer protein 2 Neighboring gene TOM1-like protein 5 Neighboring gene alcohol dehydrogenase Neighboring gene probable adenylate kinase 2, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol-3-phosphatase SAC1
Names
Os08g0109100
P0007D08.10-1
P0007D08.10-2
phosphoinositide phosphatase SAC1
putative sac domain-containing inositol phosphatase 3
sac domain-containing inositol phosphatase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    456303..463353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794402.2 → XP_015649888.1  phosphatidylinositol-3-phosphatase SAC1 isoform X1

    UniProtKB/TrEMBL
    B8BA47, B9FYP8
    Conserved Domains (1) summary
    pfam02383
    Location:89 → 387
    Syja_N; SacI homology domain

  2. XM_015794404.2 → XP_015649890.1  phosphatidylinositol-3-phosphatase SAC1 isoform X2

    UniProtKB/TrEMBL
    A0A0P0XBG1, B8BA47, Q6ZC72
    Conserved Domains (1) summary
    pfam02383
    Location:89 → 387
    Syja_N; SacI homology domain
Nucleotide Protein
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