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LOC4344380 ubiquitin-activating enzyme E1 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344380, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4344380
Gene description
ubiquitin-activating enzyme E1 3
Locus tag
OSNPB_070692900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 11.6), flowers (RPKM 7.5) and 6 other tissues See more
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Genomic context

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See LOC4344380 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29712969..29717802)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29478763..29483638)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene eukaryotic translation initiation factor 2 subunit alpha homolog Neighboring gene protein MALE DISCOVERER 2 Neighboring gene pyruvate decarboxylase 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin activating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-activating enzyme E1 3
Names
Os07g0692900
P0034A04.123
putative ubiquitin-activating enzyme

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    29712969..29717802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792184.3 → XP_015647670.1  ubiquitin-activating enzyme E1 3 isoform X2

    UniProtKB/TrEMBL
    B8B6A7, Q84NQ2
    Conserved Domains (1) summary
    TIGR01408
    Location:37 → 1043
    Ube1; ubiquitin-activating enzyme E1

  2. XM_015792183.3 → XP_015647669.1  ubiquitin-activating enzyme E1 3 isoform X1

    UniProtKB/TrEMBL
    B8B6A7
    Conserved Domains (1) summary
    TIGR01408
    Location:50 → 1056
    Ube1; ubiquitin-activating enzyme E1
Nucleotide Protein
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