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LOC4344324 NAC domain-containing protein 87 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344324, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344324
Gene description
NAC domain-containing protein 87
Locus tag
OSNPB_070684800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
NAC15
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Genomic context

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See LOC4344324 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29274260..29276116, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29040435..29042304, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266496 Neighboring gene leucine-rich repeat extensin-like protein 5 Neighboring gene uncharacterized LOC9267143 Neighboring gene WUSCHEL-related homeobox 11-like Neighboring gene cyclic dof factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAC domain-containing protein 87
Names
NAC transcription factor 15
OSJNBa0060O17.23
Os07g0684800
putative GRAB2 protein(Geminivirus Rep A-binding)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    29274260..29276116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792377.3 → XP_015647863.1  NAC domain-containing protein 87

    UniProtKB/TrEMBL
    A0A0N7KP30, A2YQ18, A3BNJ0, Q6Z4N0
    Conserved Domains (1) summary
    pfam02365
    Location:22 → 147
    NAM; No apical meristem (NAM) protein
Nucleotide Protein
Heading Accession and Version

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