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LOC4344306 uncharacterized LOC4344306 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344306, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344306
Gene description
uncharacterized LOC4344306
Locus tag
OSNPB_070681600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4344306 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29135275..29142436)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28901449..28908684)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable calcium-binding protein CML24 Neighboring gene mediator of RNA polymerase II transcription subunit 33A Neighboring gene probable galacturonosyltransferase 7 Neighboring gene protein PYRICULARIA ORYZAE RESISTANCE 21-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA unwinding involved in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4344306
Names
OSJNBa0008J01.26
Os07g0681600
probable ATP-dependent DNA helicase RecQ
putative ATP-dependent DNA helicase recQ

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    29135275..29142436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015790167.3 → XP_015645653.1  uncharacterized protein LOC4344306

    UniProtKB/TrEMBL
    A0A0N7KP27, B9FUX4, Q7XHW1
    Conserved Domains (2) summary
    COG0514
    Location:1 → 618
    RecQ; Superfamily II DNA helicase RecQ [Replication, recombination and repair]
    pfam14493
    Location:654 → 748
    HTH_40; Helix-turn-helix domain
Nucleotide Protein
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