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LOC4344265 large ribosomal subunit protein eL18x [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344265, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344265
Gene description
large ribosomal subunit protein eL18x
Locus tag
OSNPB_070674700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 43.7), leaves after flowering (RPKM 34.9) and 6 other tissues See more
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Genomic context

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See LOC4344265 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28771194..28773755)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28537512..28540098)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene phylloplanin Neighboring gene phylloplanin Neighboring gene ethylene-responsive transcription factor RAP2-3 Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large ribosomal subunit protein eL18x
Names
Os07g0674700
P0037D09.17
P0618H09.15
putative cytoplasmic ribosomal protein L18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    28771194..28773755
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789204.3 → XP_015644690.1  large ribosomal subunit protein eL18x isoform X1

    UniProtKB/TrEMBL
    A2YPV7, Q0D3P2, Q69J88, Q6ZDW5
    Conserved Domains (1) summary
    pfam17135
    Location:2 → 195
    Ribosomal_L18; Ribosomal protein 60S L18 and 50S L18e

  2. XM_015789205.3 → XP_015644691.1  large ribosomal subunit protein eL18x isoform X2

    Conserved Domains (1) summary
    pfam17135
    Location:2 → 187
    Ribosomal_L18; Ribosomal protein 60S L18 and 50S L18e
Nucleotide Protein
Heading Accession and Version

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