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LOC4344256 serine/arginine-rich-splicing factor SR34 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344256, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4344256
Gene description
serine/arginine-rich-splicing factor SR34
Locus tag
OSNPB_070673500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 48.7), leaves after flowering (RPKM 43.7) and 6 other tissues See more
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Genomic context

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See LOC4344256 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28697614..28702042, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28469794..28474222, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281655 Neighboring gene universal stress protein PHOS34 Neighboring gene uncharacterized LOC9269218 Neighboring gene F-box/kelch-repeat protein SKIP6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich-splicing factor SR34
Names
Os07g0673500
P0470D12.143-1
putative pre-mRNA splicing factor SF2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    28697614..28702042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791676.2 → XP_015647162.1  serine/arginine-rich-splicing factor SR34 isoform X1

    UniProtKB/TrEMBL
    Q7XI72
    Conserved Domains (3) summary
    COG0724
    Location:59 → 234
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12599
    Location:74 → 145
    RRM1_SF2_plant_like; RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins
    cd12602
    Location:174 → 249
    RRM2_SF2_plant_like; RNA recognition motif 2 in plant pre-mRNA-splicing factor SF2 and similar proteins

  2. XM_015791677.3 → XP_015647163.1  serine/arginine-rich-splicing factor SR34 isoform X2

    UniProtKB/TrEMBL
    A0A0P0XA03, Q0D3Q1
    Conserved Domains (2) summary
    cd12599
    Location:8 → 79
    RRM1_SF2_plant_like; RNA recognition motif 1 (RRM1) found in plant pre-mRNA-splicing factor SF2 and similar proteins
    cd12602
    Location:108 → 183
    RRM2_SF2_plant_like; RNA recognition motif 2 (RRM2) found in plant pre-mRNA-splicing factor SF2 and similar proteins

RNA

  1. XR_001547681.2 RNA Sequence

  2. XR_010742438.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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