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LOC4344188 elongation factor 1-beta-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344188, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4344188
Gene description
elongation factor 1-beta-like
Locus tag
OSNPB_070662500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
EF-1-beta; EF-1-beta'
Expression
Ubiquitous expression in flower buds (RPKM 327.9), roots before flowering (RPKM 219.7) and 6 other tissues See more
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Genomic context

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See LOC4344188 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28169359..28171903)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (27941738..27944167)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene nucleolar protein 56-like Neighboring gene pentatricopeptide repeat-containing protein At1g01970 Neighboring gene berberine bridge enzyme-like Cyn d 4 Neighboring gene pre-rRNA-processing protein ESF2 Neighboring gene pentatricopeptide repeat-containing protein At1g08070, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Cloning and sequencing of the cDNA encoding rice elongation factor 1 beta'. Matsumoto S, et al. FEBS Lett, 1992 Oct 12. PMID 1397289
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of eukaryotic translation elongation factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongation factor 1-beta
Names
Elongation factor 1-beta'
Elongation factor 1B-alpha 2
LOC_Os07g46750
P0453E03.116
eEF-1B alpha 2
elongation factor 1 beta'
putative translation elongation factor eEF-1 beta' chain

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403233.1 → NP_001390162.1  elongation factor 1-beta

    Status: VALIDATED

    Source sequence(s)
    CB684309, CF311989, CI744544
    UniProtKB/Swiss-Prot
    P29545, Q0D3W6, Q8H2U3
    UniProtKB/TrEMBL
    A2YPM1, A3BN41

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    28169359..28171903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P29545.3 GenPept UniProtKB/Swiss-Prot:P29545

Gene LinkOut

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Molecular Biology Databases
Research Materials