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LOC4344031 uncharacterized LOC4344031 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344031, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344031
Gene description
uncharacterized LOC4344031
Locus tag
OSNPB_070636200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1136_D11.106
Expression
Ubiquitous expression in leaves before flowering (RPKM 9.5), flower buds (RPKM 8.5) and 6 other tissues See more
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Genomic context

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See LOC4344031 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (26643669..26655991)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (26416929..26429280)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene H/ACA ribonucleoprotein complex subunit 4 Neighboring gene probable transcription factor At5g28040 Neighboring gene uncharacterized LOC4344032 Neighboring gene uncharacterized LOC136357309

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication fork processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4344031
Names
Os07g0636200
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a-like
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    26643669..26655991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015790638.3 → XP_015646124.1  uncharacterized protein LOC4344031

    UniProtKB/TrEMBL
    B8B556, Q0D4B6, Q69WP6
    Conserved Domains (2) summary
    COG0553
    Location:248 → 705
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18010
    Location:256 → 479
    DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1
Nucleotide Protein
Heading Accession and Version

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