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Gm5617 predicted gene 5617 [ Mus musculus (house mouse) ]

Gene ID: 434402, updated on 17-Aug-2024

Summary

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Official Symbol
Gm5617provided by MGI
Official Full Name
predicted gene 5617provided by MGI
Primary source
MGI:MGI:3643566
See related
Ensembl:ENSMUSG00000042293 AllianceGenome:MGI:3643566
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG434402
Summary
Predicted to be active in nucleus. Orthologous to human C11orf71 (chromosome 11 open reading frame 71). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human all
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Genomic context

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See Gm5617 in Genome Data Viewer
Location:
9 A5.3; 9 26.43 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (48406643..48407275)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (48495343..48495975)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_24068 Neighboring gene STARR-positive B cell enhancer ABC_E3826 Neighboring gene RNA exonuclease 2 Neighboring gene STARR-positive B cell enhancer ABC_E9759 Neighboring gene RNA binding motif protein 7 Neighboring gene STARR-seq mESC enhancer starr_24069 Neighboring gene nicotinamide N-methyltransferase Neighboring gene STARR-positive B cell enhancer ABC_E5067 Neighboring gene STARR-seq mESC enhancer starr_24071 Neighboring gene STARR-seq mESC enhancer starr_24072 Neighboring gene predicted gene, 53521

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Clone Names

  • MGC5739

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C11orf71 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004191.3 → NP_001004191.2  uncharacterized protein C11orf71 homolog

    See identical proteins and their annotated locations for NP_001004191.2

    Status: VALIDATED

    Source sequence(s)
    AC160992, AK007723
    Consensus CDS
    CCDS52787.1
    UniProtKB/Swiss-Prot
    E9QNP8, Q91VN2
    Related
    ENSMUSP00000040380.8, ENSMUST00000048824.9
    Conserved Domains (1) summary
    pfam15747
    Location:1 → 106
    DUF4687; Domain of unknown function (DUF4687)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    48406643..48407275
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q91VN2.2 GenPept UniProtKB/Swiss-Prot:Q91VN2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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