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LOC4343993 malate dehydrogenase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343993, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4343993
Gene description
malate dehydrogenase, chloroplastic
Locus tag
OSNPB_070630800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4343993 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (26380348..26382529, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (26153960..26156087, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ribonuclease 1 Neighboring gene uncharacterized LOC136357462 Neighboring gene probable glucomannan 4-beta-mannosyltransferase 7 Neighboring gene defective in cullin neddylation protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-malate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in malate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
malate dehydrogenase, chloroplastic
Names
Os07g0630800
P0011H09.138
putative malate dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403199.1 → NP_001390128.1  malate dehydrogenase, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AK071297, CA754415, CI596001, CI727138
    UniProtKB/TrEMBL
    A0A0P0X991, A2X2W9, Q8H4E0

  2. NM_001403200.1 → NP_001390129.1  malate dehydrogenase, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AK068064, CI233233
    UniProtKB/TrEMBL
    A0A0P0X991, A2X2W9, Q8H4E0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    26380348..26382529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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