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yem yemanuclein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 43439, updated on 2-Nov-2024

Summary

Official Symbol
yemprovided by FlyBase
Official Full Name
yemanucleinprovided by FlyBase
Primary source
FLYBASE:FBgn0005596
Locus tag
Dmel_CG14513
See related
AllianceGenome:FB:FBgn0005596
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG11879; CG14513; Dmel\CG14513; yem-alpha; yema; yemalpha; Yemalpha; yG4.5; yT4.5
Summary
Enables DNA binding activity. Involved in chromatin organization and female meiotic nuclear division. Located in germinal vesicle; kinetochore; and male pronucleus. Is expressed in several structures, including embryonic/larval midgut primordium; ganglia; germline cell; gonad; and head epidermis primordium. Orthologous to human UBN1 (ubinuclein 1) and UBN2 (ubinuclein 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See yem in Genome Data Viewer
Location:
98F10-98F10; 3-97 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (29118330..29122879, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (24944052..24948601, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene alpha-Mannosidase class I b Neighboring gene Pyruvate dehydrogenase E1 beta subunit Neighboring gene Autophagy-related 14 Neighboring gene Choline transporter-like 2 Neighboring gene dim gamma-tubulin 6

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in chromatin organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in female meiotic nuclear division IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in germinal vesicle IDA
Inferred from Direct Assay
more info
PubMed 
located_in kinetochore IDA
Inferred from Direct Assay
more info
PubMed 
located_in male pronucleus IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
yemanuclein
Names
CG14513-PA
CG14513-PB
yem-PA
yem-PB
yem-alpha
yema nuclein alpha
yema-gene-4.5
yemalpha
yemanuclein alpha
yemanuclein-alpha

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    29118330..29122879 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_057545.4NP_476893.1  yemanuclein, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_476893.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P25992, Q6AWM5, Q9VAP4
    UniProtKB/TrEMBL
    H8F4N7
    Related
    FBpp0084784
    Conserved Domains (2) summary
    pfam08729
    Location:129178
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:443633
    UBN_AB; Ubinuclein conserved middle domain
  2. NM_001276125.1NP_001263054.1  yemanuclein, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001263054.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KHA1
    Conserved Domains (2) summary
    pfam08729
    Location:129178
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:443633
    UBN_AB; Ubinuclein conserved middle domain