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LOC4343885 exportin-T-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343885, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4343885
Gene description
exportin-T-like
Locus tag
OSNPB_070613300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1003_H02.130
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Genomic context

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See LOC4343885 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25464864..25473564)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25239771..25248059)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable GTP diphosphokinase RSH3, chloroplastic Neighboring gene 60S ribosomal protein L27a-2 Neighboring gene serine/threonine-protein kinase RIPK Neighboring gene uncharacterized LOC136357348 Neighboring gene uncharacterized LOC136357347

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA re-export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exportin-T
Names
Exportin(tRNA)
LOC_Os07g42180
P0616D06.103
Protein PAUSED homolog
putative exportin, tRNA (nuclear export receptor for tRNAs)
tRNA exportin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403704.1 → NP_001390633.1  exportin-T

    Status: VALIDATED

    Source sequence(s)
    AK059512, AK099895, AK106898, CI098377
    UniProtKB/Swiss-Prot
    A0A0P0X8S3, Q8GTZ0, Q8H3A7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    25464864..25473564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H3A7.1 GenPept UniProtKB/Swiss-Prot:Q8H3A7

Gene LinkOut

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Molecular Biology Databases
Research Materials