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LOC4343797 probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343797, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4343797
Gene description
probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410
Locus tag
OSNPB_070597100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1579_C03.5
Expression
Ubiquitous expression in mature seeds (RPKM 36.9), roots before flowering (RPKM 30.5) and 6 other tissues See more
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Genomic context

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See LOC4343797 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24565898..24570689)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24341149..24345971)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable WRKY transcription factor 3 Neighboring gene eukaryotic translation initiation factor 5A Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g74360 Neighboring gene uncharacterized LOC9266470

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410
Names
Os07g0597100
P0453E05.123

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    24565898..24570689
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792407.3 → XP_015647893.1  probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410

    UniProtKB/TrEMBL
    A2YNC3
    Conserved Domains (2) summary
    COG3268
    Location:14 → 449
    COG3268; Uncharacterized conserved protein, related to short-chain dehydrogenases [Function unknown]
    cl21454
    Location:17 → 87
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
Heading Accession and Version

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