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LOC4343796 eukaryotic translation initiation factor 5A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343796, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4343796
Gene description
eukaryotic translation initiation factor 5A
Locus tag
OSNPB_070597000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
eIF-5A
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Genomic context

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See LOC4343796 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24542390..24545591, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24317731..24321041, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357453 Neighboring gene probable WRKY transcription factor 3 Neighboring gene probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g74360

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational termination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 5A
Names
Os07g0597000
P0453E05.118
translation initiation factor 5A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    24542390..24545591 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791466.3 → XP_015646952.1  eukaryotic translation initiation factor 5A

    UniProtKB/TrEMBL
    A0A0P0X8L6, Q84ZK1, Q9LEE4, Q9ZSU2
    Conserved Domains (1) summary
    PLN03107
    Location:2 → 160
    PLN03107; eukaryotic translation initiation factor 5A; Provisional

  2. XM_066312236.1 → XP_066168333.1  eukaryotic translation initiation factor 5A

    UniProtKB/TrEMBL
    A0A0P0X8L6, Q84ZK1, Q9ZSU2
Nucleotide Protein
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