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LOC4343785 probable indole-3-acetic acid-amido synthetase GH3.8 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343785, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4343785
Gene description
probable indole-3-acetic acid-amido synthetase GH3.8
Locus tag
OSNPB_070592600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GH3-8; GH3.8; OsMGH3; OsGH3-8; OsJ_24963; OsJ_023992; OJ1710_H11.110
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Genomic context

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See LOC4343785 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24374221..24376651, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24149728..24152093, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene momilactone A synthase-like Neighboring gene aspartic proteinase 36 Neighboring gene FRIGIDA-like protein 3 Neighboring gene zinc finger protein 7 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice. Dai Z, et al. J Exp Bot, 2018 Oct 12. PMID 30053063, Free PMC Article
  2. The Systemic Acquired Resistance Regulator OsNPR1 Attenuates Growth by Repressing Auxin Signaling through Promoting IAA-Amido Synthase Expression. Li X, et al. Plant Physiol, 2016 Sep. PMID 27378815, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The combined data show that the miR156f-OsSPL7-OsGH3.8 pathway regulates tiller number and plant height in rice, and this pathway may allow crosstalk between miR156 and auxin.
    Title: Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.
  2. The protein of Gene:4336597 regulates the transcription of this gene by binding to the promoter.
    Title: Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.
  3. Data show that OsNPR1 affects rice growth and development by disrupting the auxin pathway at least partially through indirectly up-regulating IAA-amido synthetase OsGH3.8 expression.
    Title: The Systemic Acquired Resistance Regulator OsNPR1 Attenuates Growth by Repressing Auxin Signaling through Promoting IAA-Amido Synthase Expression.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid-amino acid ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
indole-3-acetic acid-amido synthetase GH3.8
Names
Auxin-responsive GH3-like protein 8
Indole-3-acetic acid-amido synthetase GH3.8
LOC_Os07g40290
putative Nt-gh3 deduced protein
NP_001409179.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422250.1 → NP_001409179.1  indole-3-acetic acid-amido synthetase GH3.8

    Status: VALIDATED

    Source sequence(s)
    AK101193, AP014963, CI136400, CI148513, CI235821, CI596225, CI606932, CI646638
    UniProtKB/Swiss-Prot
    A2YN96, A3BLS0, B9FY76, Q0D4Z6, Q7XIN9
    UniProtKB/TrEMBL
    B1N696

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    24374221..24376651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0D4Z6.1 GenPept UniProtKB/Swiss-Prot:Q0D4Z6

Gene LinkOut

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Molecular Biology Databases
Research Materials