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LOC4343553 mixed-linked glucan synthase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343553, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4343553
Gene description
mixed-linked glucan synthase 2-like
Locus tag
OSNPB_070552800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CSLF2; OsCslF2; P0013G11.2
Expression
Biased expression in flowers (RPKM 121.1) and flower buds (RPKM 38.1) See more
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Genomic context

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See LOC4343553 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22199480..22202584)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21970306..21973381)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable mixed-linked glucan synthase 8 Neighboring gene mixed-linked glucan synthase 2-like Neighboring gene uncharacterized LOC136357345 Neighboring gene putative mixed-linked glucan synthase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mixed-linked glucan synthase 2
Names
1,3;1,4-beta-D-glucan synthase 2
Cellulose synthase-like protein F2
LOC_Os07g36690
OSJNBb0041B22.126
putative cellulose synthase-like protein OsCslF1
NP_001409125.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422196.1 → NP_001409125.1  mixed-linked glucan synthase 2

    Status: VALIDATED

    Source sequence(s)
    AK100523, CI128146, CI229972, CI593999
    UniProtKB/Swiss-Prot
    A0A0P0X7S7, Q84S11, Q8W1M8, Q944E1
    UniProtKB/TrEMBL
    B8B790

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    22199480..22202584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84S11.1 GenPept UniProtKB/Swiss-Prot:Q84S11

Gene LinkOut

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Research Materials