U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4343443 thiamine thiazole synthase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343443, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4343443
Gene description
thiamine thiazole synthase, chloroplastic-like
Locus tag
OSNPB_070529600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in leaves before flowering (RPKM 9442.7), leaves after flowering (RPKM 2622.7) and 3 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4343443 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (20952291..20953779)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20724542..20726073)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene syntaxin-132 Neighboring gene isocitrate lyase-like Neighboring gene protein ALP1-like Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 8 Neighboring gene protein translation factor SUI1 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in thiamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
thiamine thiazole synthase, chloroplastic-like
Names
Os07g0529600
P0681F05.106-1
P0681F05.106-2
putative thiamine biosynthesis protein
thiamine biosynthetic enzyme
thiamine thiazole synthase 2, chloroplastic

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    20952291..20953779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791910.3 → XP_015647396.1  thiamine thiazole synthase, chloroplastic-like

    UniProtKB/Swiss-Prot
    A3BKJ8, Q0D5W8, Q7XXS4, Q8GVQ3
    UniProtKB/TrEMBL
    A2YM28
    Conserved Domains (2) summary
    PLN02661
    Location:1 → 355
    PLN02661; Putative thiazole synthesis
    pfam01946
    Location:69 → 302
    Thi4; Thi4 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials