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LOC4343248 probable trehalose-phosphate phosphatase 10 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343248, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4343248
Gene description
probable trehalose-phosphate phosphatase 10
Locus tag
OSNPB_070485000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TPP10; OsTPP10; OsJ_24268
Expression
Broad expression in flower buds (RPKM 1.1), flowers (RPKM 1.0) and 6 other tissues See more
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Genomic context

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See LOC4343248 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17982011..17986554)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (17816126..17820605)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB4-like Neighboring gene adenine phosphoribosyltransferase 4 Neighboring gene beta-ureidopropionase Neighboring gene uncharacterized LOC107281691 Neighboring gene asparagine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene WAT1-related protein At5g47470

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables trehalose-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable trehalose-phosphate phosphatase 10
Names
LOC_Os07g30160
Trehalose 6-phosphate phosphatase
NP_001409091.1
XP_066168078.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422162.1 → NP_001409091.1  probable trehalose-phosphate phosphatase 10

    Status: VALIDATED

    Source sequence(s)
    AK070085, AP014963
    UniProtKB/Swiss-Prot
    A0A0P0X675, Q0D6F4
    UniProtKB/TrEMBL
    B8B689

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    17982011..17986554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066311981.1 → XP_066168078.1  probable trehalose-phosphate phosphatase 10 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0X675, Q0D6F4
    UniProtKB/TrEMBL
    B8B689

RNA

  1. XR_001547821.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0D6F4.1 GenPept UniProtKB/Swiss-Prot:Q0D6F4

Gene LinkOut

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Research Materials