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LOC4343220 DNA-directed RNA polymerase III subunit RPC8 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343220, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4343220
Gene description
DNA-directed RNA polymerase III subunit RPC8
Locus tag
OSNPB_070477000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 6.8), roots after flowering (RPKM 5.9) and 6 other tissues See more
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Genomic context

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See LOC4343220 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17436428..17440998, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (17270834..17274719, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase CYP21-4 Neighboring gene thioredoxin-like protein CDSP32, chloroplastic Neighboring gene S-adenosylmethionine synthase 2-like Neighboring gene uncharacterized LOC4343221 Neighboring gene uncharacterized LOC112939613

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase III promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit RPC8
Names
Os07g0477000
P0640E12.113
putative DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
NP_001409085.1
XP_015646733.1
XP_015646734.1
XP_015646736.1
XP_015646737.1
XP_066168075.1
XP_066168076.1
XP_066168077.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422156.1 → NP_001409085.1  DNA-directed RNA polymerase III subunit RPC8

    Status: VALIDATED

    Source sequence(s)
    AK059952
    UniProtKB/TrEMBL
    A0A0P0X6C2, B8B5Z9, Q84NN3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    17436428..17440998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066311978.1 → XP_066168075.1  DNA-directed RNA polymerase III subunit RPC8 isoform X1

  2. XM_066311979.1 → XP_066168076.1  DNA-directed RNA polymerase III subunit RPC8 isoform X2

  3. XM_015791251.3 → XP_015646737.1  DNA-directed RNA polymerase III subunit RPC8 isoform X3

    UniProtKB/TrEMBL
    A0A0P0X6C2, B8B5Z9, Q84NN3
    Conserved Domains (2) summary
    COG1095
    Location:1 → 187
    RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
    cd04330
    Location:2 → 81
    RNAP_III_Rpc25_N; Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP ...

  4. XM_015791250.3 → XP_015646736.1  DNA-directed RNA polymerase III subunit RPC8 isoform X3

    UniProtKB/TrEMBL
    A0A0P0X6C2, B8B5Z9, Q84NN3
    Conserved Domains (2) summary
    COG1095
    Location:1 → 187
    RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
    cd04330
    Location:2 → 81
    RNAP_III_Rpc25_N; Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP ...

  5. XM_015791247.3 → XP_015646733.1  DNA-directed RNA polymerase III subunit RPC8 isoform X3

    UniProtKB/TrEMBL
    A0A0P0X6C2, B8B5Z9, Q84NN3
    Conserved Domains (2) summary
    COG1095
    Location:1 → 187
    RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
    cd04330
    Location:2 → 81
    RNAP_III_Rpc25_N; Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP ...

  6. XM_066311980.1 → XP_066168077.1  DNA-directed RNA polymerase III subunit RPC8 isoform X3

    UniProtKB/TrEMBL
    A0A0P0X6C2, B8B5Z9, Q84NN3

  7. XM_015791248.3 → XP_015646734.1  DNA-directed RNA polymerase III subunit RPC8 isoform X3

    UniProtKB/TrEMBL
    A0A0P0X6C2, B8B5Z9, Q84NN3
    Conserved Domains (2) summary
    COG1095
    Location:1 → 187
    RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
    cd04330
    Location:2 → 81
    RNAP_III_Rpc25_N; Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP ...
Nucleotide Protein
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